Function reference • arealutils

All functions

besag_aghq(): Fit Besag Small Area Estimation model using aghq.

besag_inla(): Fit Besag Small Area Estimation model using R-INLA.

besag_tmb(): Fit Besag Small Area Estimation model using TMB.

besag_tmbstan(): Fit Besag Small Area Estimation model using tmbstan.

best_average(): Compute length-scale such that averagely distant points have correlation p.

border_lengths(): Create object containing lengths of borders from sf object.

border_precision(): Create border ICAR precision matrix from sf.

bym2_aghq(): Fit BYM2 Small Area Estimation model using aghq.

bym2_inla(): Fit BYM2 Small Area Estimation model using R-INLA.

bym2_tmb(): Fit BYM2 Small Area Estimation model using TMB.

bym2_tmbstan(): Fit BYM2 Small Area Estimation model using tmbstan.

centroid_covariance(): Compute centroid kernel Gram matrix.

centroid_distance(): Compute distances between area centroids.

ck_aghq(): Fit Bayesian Centroid MVN Small Area Estimation model using aghq.

ck_tmb(): Fit Bayesian Centroid MVN Small Area Estimation model using TMB.

ck_tmbstan(): Fit Bayesian Centroid MVN Small Area Estimation model using tmbstan.

constant_aghq(): Fit constant Small Area Estimation model using aghq.

constant_inla(): Fit constant Small Area Estimation model using R-INLA.

constant_tmb(): Fit constant Small Area Estimation model using TMB.

constant_tmbstan(): Fit constant Small Area Estimation model using tmbstan.

create_folds(): Create cross-validation training data sets.

create_sf_grid(): Create height by width grid sf object

crps(): Compute an approximation to the continuous ranked probability score.

dic(): Deviance information criterion generic.

dxbinom(): Density of the generalised binomial distribution.

fck_aghq(): Fit Centroid MVN Small Area Estimation model using aghq.

fck_inla(): Fit Centroid MVN Small Area Estimation model using R-INLA.

fck_tmb(): Fit Centroid MVN Small Area Estimation model using TMB.

fck_tmbstan(): Fit Centroid MVN Small Area Estimation model using tmbstan.

fik_aghq(): Fit Integrated MVN Small Area Estimation model using aghq.

fik_inla(): Fit Sampling MVN Small Area Estimation model using R-INLA.

fik_tmb(): Fit Integrated MVN Small Area Estimation model using TMB.

fik_tmbstan(): Fit Integrated MVN Small Area Estimation model using tmbstan.

get_scale(): Compute scale of a precision matrix using R-INLA.

get_time(): Report the time taken to fit the model.

held_out_metrics(): Compute forecast assessments for model at a single held-out point.

iid_aghq(): Fit IID Small Area Estimation model using aghq.

iid_inla(): Fit IID Small Area Estimation model using R-INLA.

iid_tmb(): Fit IID Small Area Estimation model using TMB.

iid_tmbstan(): Fit IID Small Area Estimation model using tmbstan.

ik_aghq(): Fit Bayesian Integrated MVN Small Area Estimation model using aghq.

ik_tmb(): Fit Bayesian Integrated MVN Small Area Estimation model using TMB.

ik_tmbstan(): Fit Bayesian Integrated MVN Small Area Estimation model using tmbstan.

integrated_covariance(): Compute integrated kernel Gram matrix.

invgamma_prior(): Find parameters of the inverse Gamma distribution such that plb of the probability mass is below lb and pub of the probability mass is above ub.

list_to_df(): Bind the rows of a list together, adding an id column.

marginal_intervals(): Intervals for posterior marginals.

mat_to_nb(): Wrapper function for spdep::mat2listw.

matern(): The Matern covariance function with smoothness parameter 3/2.

mw: Malawi DHS 2015 Survey Data.

nb_to_graph(): Create a graph from nb.

nb_to_precision(): Create ICAR precision matrix from nb.

plot_graph(): Produce a ggplot2 visualisation of a (neighbourhood) graph.

plot_matrix(): Produce a ggplot2 visualisation of a matrix.

riebler_gv(): Compute the Riebler generalised variance of a covariance matrix.

rows_to_list(): Convert the rows of a dataframe to a list.

sample_marginal(): Marginal samples.

sample_quantile(): Compute an the quantile of an observation within a vector of samples.

scale_gmrf_precision(): Scales the precision matrix of a Gaussian Markov random field.

sf_to_nb(): Wrapper function for spdep::poly2nb.

update_naming(): A dictionary to convert from internal names to human readable names, used in the manuscript.

waic(): Watanabe–Akaike (Widely-Applicable) information criterion generic.

wicar_inla(): Fit Weighted ICAR Small Area Estimation model using R-INLA.