Experiments

Simulation study

Description	File
Simulation geometries	simulation-geometries
CRPS boxplots of the intercept parameter	crps-boxplot-intercept
CRPS boxplots of the spatial random effect parameter	crps-boxplot-rho
PIT histograms and ECDF difference plots	histogram-ecdf

HIV prevalence study

Outputs

Description	File
Prevalence ladder plots	prev-ladder
CRPS maps for estimating prevalence	crps-map-hiv-surveys-no-constant
MAE maps for estimating prevalence	mae-map-hiv-surveys-no-constant
MSE maps for estimating prevalence	mse-map-hiv-surveys-no-constant

Reports

• cv: check that the cross-validation code works as intended

Resources

• resources: a collection of links to resources I found useful

Checks

• bin-gaussian: comparison of binomial of sum of Gaussians versus sum of binomial of Gaussians
• ik-compute: check that the Stan code indeed calculates the integrated kernel correctly
• ik-converge: compare convergence rate of the integrated kernel by number of samples
• xbinom: sampling from the (pseudo-)likelihoods implied by the extended binomial

Demonstrations

• areal-kernels: short demonstration of fitting areal kernel models in Stan

Explorations

• inla-spde
• pointless: following code from Wilson and Wakefield

Manuscript

• paper
• appendix